Flight tickets from Tokyo to San Juan

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Flight deals from Tokyo to San Juan

Looking for a cheap last-minute deal or the best return flight from Tokyo to San Juan? Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from Tokyo to San Juan

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to San Juan flights are currently cheapest in September.

Alternative Tokyo to San Juan routes

Looking for the cheapest, fastest or easiest route from Tokyo to San Juan? You could fly into the following airports instead.

Tokyo to San Juan: Flight information

The things to know before you go.
Cheapest flight found₹ 48,263
Cheapest month to flySeptember

Finding cheap flights from Tokyo to San Juan: Frequently asked questions

There are 6 airports in San Juan: San Juan Isla Grande, San Juan Luis Munoz Marin, Roosevelt Roads, Ponce, Vieques, and Culebra.
The best price we found for a return flight from Tokyo to San Juan is ₹ 77,133. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
Currently, there are no airlines that fly direct from Tokyo to San Juan. But we found flights with one or more stops from ₹ 77,133.
As of March 2025, there are no flights flying from Tokyo to San Juan.
The cheapest month to fly from Tokyo to San Juan is usually March 2025.
If you're flying from Tokyo, the cheapest airport near San Juan is San Juan Luis Munoz Marin – which is 11.3 km away from the centre of San Juan. We've found flights into this airport from ₹ 77,133.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to San Juan on Saturday, 5 April 2025.
No airlines currently offer direct flights between Tokyo and San Juan. Most routes have one or more stops.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to San Juan but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to San Juan is around 40 days in advance, so don’t leave your flight to the last minute.
In March, the average temperature is usually around 25°C. August is typically the warmest month in San Juan, when it usually averages around 29°C. You can expect the least rain in February. The coldest month is January, with temperatures averaging 23°C. The rainiest month is September.
The cheapest airline that flies to San Juan is Zipair .

Travelling from Tokyo to San Juan: what you need to know

  • Tokyo is home to two main airports where you can start your adventure. Check out your options for reserving a flight from Tokyo to San Juan flying out of Haneda Airport (HND) or Narita International Airport (NRT).

  • Luis Munoz Marin International Airport (SJU) is the primary hub where you can touch down in San Juan.

  • Leave enough time to get on your flight from Tokyo to San Juan. It's generally best to arrive at least two hours before international departures and an hour ahead for domestic flights.

  • Flying during a popular month like June? Major public holidays and other popular periods can mean longer queues at check-in and security. Play things extra safe and arrive up to four hours ahead of an international flight and two hours before a domestic departure.

Flying from Tokyo

Haneda Airport (HND)

  • Consider adding a stopover to potentially save money on your flight from Tokyo to San Juan. Simply uncheck 'Direct flights only' when searching for departures from Haneda Airport. Break up the journey at one of these popular airports:

    • John F. Kennedy International Airport (JFK)

    • Hartsfield-Jackson Atlanta International Airport (ATL)

    • O'Hare International Airport (ORD)

  • Central Tokyo to HND is approximately 16 kilometres. Depending on traffic, it'll take you about 16 minutes to reach there if you're ride-sharing, catching a cab or driving.

  • Catching an early flight from Tokyo to San Juan? Avoid the last-minute rush to the airport (and catch some extra z's) by picking one of these hotels near Haneda Airport:

Narita International Airport (NRT)

  • Split up your flight from Tokyo to San Juan with a stop so you can freshen up or cross a new place off your list. Popular stopovers between Haneda Airport and San Juan include:

    • John F. Kennedy International Airport (JFK)

    • Hartsfield-Jackson Atlanta International Airport (ATL)

    • O'Hare International Airport (ORD)

  • The drive from central Tokyo to NRT typically takes 58 minutes, depending on traffic. It's approximately 64 kilometres from the city centre to the airport.

  • Get your holiday started early with an extra night away from home. Before catching your flight from Tokyo to San Juan, unwind in one of these hotels close to Narita International Airport:

Arriving in San Juan

Luis Munoz Marin International Airport (SJU)

Fernando Luis Ribas Dominicci Airport (SIG)

How to find the cheapest flights from Tokyo to San Juan

  • The cheapest price we've found for a one-way ticket from Tokyo to San Juan is ₹ 48,263. For a return flight on this route, the best price is ₹ 77,133. Depending on when you book and the availability, these fares can change.

  • Don't leave things to the last moment. You're more likely to find cheap tickets from Tokyo to San Juan if you book ahead. Airlines often have some excellent early bird discounts.

  • Finding cheap tickets from Tokyo to San Juan is easier if you can be flexible with your trip dates. Try using the 'Whole month' search function to see the lowest fares across each month and land a great deal.

  • Create a Price Alert for cheap tickets from Tokyo to San Juan. There's no need to check back in every day to see whether prices have fallen. We'll notify you when the price changes.

  • Use filters to tailor your flights from Tokyo to San Juan. Simply enter your ideal departure and arrival times, number of stops and airlines. Or sort your results by 'Cheapest' to see the best deals.

Best time to go to San Juan

  • It's time to choose your dates for your flight from Tokyo to San Juan. July is the most popular month for a trip to San Juan. If you like a more relaxed atmosphere, go in May.

  • Before locking in your flight from Tokyo to San Juan, think about the type of weather you like. September is the warmest month in San Juan, with temperatures ranging from 23ºC to 33ºC.

  • February sees average temperatures of between 20ºC and 28ºC. Look for cheap tickets from Tokyo to San Juan sometime then if you want to travel in cooler conditions.

More about San Juan

  • When it comes to looking for somewhere to rest your head, you'll find the best stays in San Juan right here. Explore these options after locking in your flight from Tokyo to San Juan:

  • All great journeys should include a little sightseeing. Castillo San Felipe del Morro, La Garita del morro de san juan bahia and Fortaleza Street are must-do's during your San Juan adventure.

Complete your San Juan trip with a car rental

  • We use the same magic that helped you find your cheap flight from Tokyo to San Juan to track down deals on car rentals. Search for your ride in seconds and compare your options in one place. Plus we give you all the info you need to drive in San Juan, from the most popular car type to the average daily price.

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.